Research

Bioinformatics; machine learning; pattern classification; proteomics; applications of nonlinear system identification; assistive devices; high performance computing on the Cell BE processor.

Application

Characterization of protein structure and function from sequence; prediction of post-translational modifi cation of proteins; species-specific prediction of protein secondary structure; hardware acceleration of bioinformatics algorithms; computational identification of thyroid response elements; development of novel assistive devices for persons with disabilities and the elderly.

Activities

• Secretary of IEEE EMBS Ottawa Chapter (2007-present)

Journal Articles

Green, J.R., Korenberg, M.J., and Aboul-Magd, Md., “MISO Dynamic Nonlinear Protein Secondary Structure Prediction”, accepted for publication in BMC Bioinformatics.

Pitre, S., North, C., Alamgir, Md., Jessulat, M., Chan, A., Luo, X., Green, J.R., Dumontier, M., Dehne, F., Golshani, A., “Global Investigation of Protein-Protein Interactions in Yeast Saccharomyces Cerevisiae Using Re-occurring Short Polypeptide Sequences”, Nucleic Acids Research 36(13):4286-4294, 2008.

Pitre, S. Alamgir, Md., Green, J.R., Dumontier, M., Dehne, F., Golshani, A., “Computational Methods for Predicting Protein-Protein Interactions”, Adv Biochem Eng Biotechnol. 110:247-267, 2008. (Review)

Green, J.R. and Korenberg, M.J., “On the Advantages of Multi-Input Single-Output Parallel Cascade Classifiers”, Ann. Biomed. Eng. 34:709-716, 2006.

Conference Publications

Green, J.R., Mahmoud, H., Dumontier, M., “Modeling Tryptic Digestion on the Cell BE Processor”, CCECE09, St. John’s NFLD, 3-6 May 2009.

Yuan, M.Y., Green, J.R., Goubran, R., “Stove Top Thermal Monitoring For Assisted Living At Home”, CMBEC31, Montreal, 10-13 June 2008.

Chan, A.D.C. and Green, J.R., “Smart Rollator Prototype”, IEEE International Workshop on Medical Measurements and Applications (MeMeA), p.97-100, Ottawa, 8-9 May 2008.

Aboul-Magd, Md. and Green, J.R., “PCI-SS: Web-Based Human and Machine Interfaces to Protein Secondary Structure Prediction”, CCECE08, Niagara Falls, Ontario, 4-7 May, 2008.

Sadeghian, A., Yim, C.H., Chan, A.D.C., Green, J.R., “Eye-Interact: A Low-Cost Eye Movement Controlled Communication System”, CMBEC30, Toronto, 16-19 June 2007.

Mulligan, K., LaRocque, J., Green, J.R., “A Low Cost Non-Contact Approach to Tongue Tracking for Special Needs Children”, CMBEC30, Toronto, 16-19 June 2007.

Green, J.R. and Korenberg, M.J., “Nonlinear system Identification Provides Insight Into Protein Folding”, CCECE06, Ottawa, Ontario, 7-10 May, 2006. (refereed on abstract only)

Green, J.R., Dmochowski G.M., Golshani A., “Prediction of Protein Sumoylation Sites Via Parallel Cascade Identification”, CMBEC06, Vancouver, 1-3 June 2006.